Advanced special topics course in metabolomics 2018
(GBSC 724)
Course will be held on Mondays, Wednesdays and Fridays 9-10:30 am in the SHELBY 1015
Schedule
| Date | Lecturer | Topic |
|---|---|---|
| Jan 8, Mon | S. Barnes | Transition from metabolism to metabolomics and targeted/untargeted approaches [PDF File] |
| Jan 10, Wed | B. Korf | The Undiagnosed Disease Network [Reference-1] [Reference-2] [Reference-3] [Reference-4] |
| Jan 12, Fri | S. Barnes | The extraordinary chemistry of the metabolome [PDF File] |
| Jan 15, Mon | Martin Luther King Holiday | |
| Jan 17, Wed | H Tiwari | Designing a complex metabolomics experiment - Cancelled |
| Jan 19, Fri | S. Barnes/ J. Prasain |
Extracting the metabolome (fluids, cells and tissues) [PDF File] |
| Jan 22, Mon | C. Petit | The platform - fundamentals in NMR and metabolomics [PDF File] |
| Jan 24, Wed | S. Barnes | The platform - GC- and LC-mass spectrometry [PDF File] |
| Jan 26, Fri | S. Barnes | Examining GC-/LC-MS data with MZmine 2.29 [PDF File 1] [Video] [PDF File 2] |
| Jan 29, Mon | S. Barnes | Uploading GC-MS and LC-MS data to XCMSonline |
| Jan 31, Wed | D. Sharer | Targeted metabolomics for congenital disease in children [Referece - Please use UAB VPN to download the file.] [PDF File] |
| Feb 2, Fri | H Tiwari | Designing a complex metabolomics experiment [PDF File] |
| Feb 5, Mon | S. Barnes | Output of XCMS features for univariate analysis [PDF File] |
| Feb 7, Wed | S. Barnes | Statistical analysis of XCMS data with MetaboAnalyst [PDF File] |
| Feb 9, Fri | RTI Intl team | Processing NMR data [PDF File] [CSV File 1 ] [CSV File 2] [CSV File 3] |
| Feb 12, Mon | S. Barnes | Pathway databases [PDF File] |
| Feb 14, Wed | S. Barnes | The metabolomics workbench [PDF File] |
| Feb 16, Fri | S. Barnes | MS-DIAL software for data analysis [PDF File] |
| Feb 19, Mon | Student presentations | |
| Feb 21, Wed | J. Prasain | MSMS of small molecules - interpretation [PDF File] |
| Feb 23, Fri | J. Prasain | Validating metabolites [PDF File] |
| Feb 26, Mon | S. Barnes | Mummichog analysis of data [PDF File] |
| Feb 28, Wed | S. Barnes | Isotopically labeled precursors to identify metabolites [PDF File] |
| Mar 2, Fri | S. Barnes | Isotopes and pathway dynamics [PDF File] |
| Mar 5, Mon | Student presentations | |
| Mar 7, Wed | J. Prasain | Advanced methods: SWATH-MS, Ion Mobility and LC-MS for lipidomics [PDF File] |
| Mar 9, Fri | J. Prasain | Lipid maps database [PDF File] |
| Mar 12, Mon | J Kabarowski | Lipid imaging-mass spectrometry |
| Mar14, Wed | J. Prasain | Novel prostanoid molecules [PDF File] |
| Mar16, Fri | M. Stoll C. Martin |
Metabolomics in models of cardiovascular disease |
| Mar 19, Mon | Student presentations | |
| Mar 21, Wed | K. Uppal* | Integrating the metabolome with the genome, transcriptome and proteome [Reference] [PDF File] |
| Mar 23, Fri | S. Barnes | In situ lipidomics in the surgical suite [PDF File] |
| Mar 26,Mon | H. Wu | The microbiome and metabolomics |
| Mar 28, Wed | Discussion about the final exam | |
| Mar 30, Fri | FINAL exam due |
* Dr. Uppal is from Emory University